STRINGSTRING
Bra000440 protein (Brassica rapa) - STRING interaction network
"Bra000440" - AT2G47115 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000440AT2G47115 (E=3e-140) | unknown protein (412 aa)    
Predicted Functional Partners:
Bra029151
AT5G51950 (E=1e-293) | glucose-methanol-choline (GMC) oxidoreductase family protein (582 aa)
     
   
  0.567
Bra028286
AT5G51950 (E=4e-290) | glucose-methanol-choline (GMC) oxidoreductase family protein (582 aa)
     
   
  0.567
Bra025813
AT1G20730 (E=5e-035) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF833 (InterPro-IPR008551), F-box associated type 1 (InterPro-IPR017451); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G20740.1); Has 303 Blast hits to 300 proteins in 118 species- Archae - 0; Bacteria - 180; Metazoa - 8; Fungi - 0; Plants - 63; Viruses - 2; Other Eukaryotes - 50 (source- NCBI BLink). (232 aa)
     
   
  0.561
Bra024496
AT2G17710 (E=7e-053) | unknown protein (155 aa)
     
   
  0.549
Bra002080
AT2G17710 (E=1e-055) | unknown protein (156 aa)
     
   
  0.549
Bra014189
AT1G49450 (E=7e-221) | transducin family protein / WD-40 repeat family protein (467 aa)
           
  0.543
Bra040774
AT1G29050 (E=5e-189) | unknown protein (376 aa)
           
  0.531
Bra030116
AT1G29050 (E=2e-199) | unknown protein (378 aa)
           
  0.531
Bra027630
AT1G63260 (E=2e-121) TET10 | TET10 (TETRASPANIN10) (258 aa)
           
  0.483
Bra029272
AT5G62210 (E=1e-062) | embryo-specific protein-related (227 aa)
           
  0.456
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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