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Bra000446 protein (Brassica rapa) - STRING interaction network
"Bra000446" - AT2G47310 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000446AT2G47310 (E=1e-080) | flowering time control protein-related / FCA gamma-related (281 aa)    
Predicted Functional Partners:
Bra019738
AT1G12050 (E=1e-227) | fumarylacetoacetase, putative (423 aa)
       
      0.898
Bra037150
AT5G66750 (E=0.0) DDM1, CHR01, CHR1, CHA1, SOM4, SOM1, ATDDM1 | CHR1 (CHROMATIN REMODELING 1); ATPase/ helicase (1199 aa)
     
 
  0.871
Bra027407
AT3G13700 (E=2e-126) | RNA-binding protein, putative (268 aa)
     
 
  0.811
Bra029747
AT3G09100 (E=0.0) | mRNA capping enzyme family protein (669 aa)
       
      0.722
Bra009992
AT5G28210 (E=2e-243) | mRNA capping enzyme family protein (627 aa)
       
      0.722
Bra005691
AT5G01290 (E=0.0) | mRNA guanylyltransferase/ phosphatase/ polynucleotide 5’-phosphatase/ protein tyrosine phosphatase/ protein tyrosine/serine/threonine phosphatase (667 aa)
       
      0.722
Bra037286
AT2G16950 (E=0.0) TRN1, ATTRN1 | TRN1 (TRANSPORTIN 1); protein transporter (895 aa)
       
      0.616
Bra013038
AT2G16950 (E=0.0) TRN1, ATTRN1 | TRN1 (TRANSPORTIN 1); protein transporter (881 aa)
       
      0.616
Bra010184
AT2G16950 (E=3e-066) TRN1, ATTRN1 | TRN1 (TRANSPORTIN 1); protein transporter (305 aa)
       
      0.616
Bra002011
AT2G16950 (E=0.0) TRN1, ATTRN1 | TRN1 (TRANSPORTIN 1); protein transporter (881 aa)
       
      0.616
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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