STRINGSTRING
Bra000447 protein (Brassica rapa) - STRING interaction network
"Bra000447" - AT2G47330 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000447AT2G47330 (E=1e-281) | DEAD/DEAH box helicase, putative (673 aa)    
Predicted Functional Partners:
Bra037770
AT5G64270 (E=0.0) | splicing factor, putative (1268 aa)
     
  0.960
Bra024281
AT5G64270 (E=0.0) | splicing factor, putative (1245 aa)
     
  0.960
Bra015322
AT1G04510 (E=5e-280) | transducin family protein / WD-40 repeat family protein (522 aa)
       
  0.935
Bra005504
AT2G33340 (E=3e-286) | nucleotide binding / ubiquitin-protein ligase (525 aa)
       
  0.935
Bra030575
AT1G04510 (E=2e-207) | transducin family protein / WD-40 repeat family protein (574 aa)
       
  0.933
Bra021844
AT2G33340 (E=3e-236) | nucleotide binding / ubiquitin-protein ligase (442 aa)
       
  0.933
Bra013145
AT2G13540 (E=0.0) ENS, ABH1, CBP80, ATCBP80 | ABH1 (ABA HYPERSENSITIVE 1); RNA cap binding (845 aa)
     
  0.927
Bra033729
AT5G44200 (E=2e-101) CBP20, ATCBP20 | CBP20 (CAP-BINDING PROTEIN 20); RNA binding / RNA cap binding (264 aa)
       
  0.924
Bra016955
AT2G41020 (E=1e-190) | WW domain-containing protein (799 aa)
     
 
    0.922
Bra014095
AT5G17900 (E=4e-084) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- extracellular region; CONTAINS InterPro DOMAIN/s- Micro-fibrillar-associated 1, C-terminal (InterPro-IPR009730); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT4G08580.1); Has 36643 Blast hits to 21191 proteins in 1090 species- Archae - 183; Bacteria - 2726; Metazoa - 17629; Fungi - 3036; Plants - 994; Viruses - 215; Other Eukaryotes - 11860 (source- NCBI BLink). (309 aa)
     
      0.908
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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