STRINGSTRING
Bra000451 protein (Brassica rapa) - STRING interaction network
"Bra000451" - AT2G47400 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000451AT2G47400 (E=1e-059) CP12-1, CP12 | CP12-1 (126 aa)    
Predicted Functional Partners:
Bra035516
AT1G32060 (E=1e-099) PRK | PRK (PHOSPHORIBULOKINASE); ATP binding / phosphoribulokinase/ protein binding (191 aa)
   
 
  0.570
Bra014946
AT3G23400 (E=6e-083) | plastid-lipid associated protein PAP / fibrillin family protein (277 aa)
   
          0.523
Bra037042
AT4G32770 (E=1e-260) VTE1, ATSDX1 | VTE1 (VITAMIN E DEFICIENT 1); tocopherol cyclase (490 aa)
   
          0.522
Bra006034
AT5G09820 (E=4e-124) | plastid-lipid associated protein PAP / fibrillin family protein (270 aa)
   
          0.521
Bra003900
AT1G72030 (E=6e-098) | GCN5-related N-acetyltransferase (GNAT) family protein (249 aa)
   
          0.520
Bra028811
AT5G03900 (E=1e-239) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast envelope; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- FeS cluster biogenesis (InterPro-IPR000361); Has 104 Blast hits to 104 proteins in 40 species- Archae - 0; Bacteria - 55; Metazoa - 0; Fungi - 0; Plants - 44; Viruses - 0; Other Eukaryotes - 5 (source- NCBI BLink). (509 aa)
   
          0.519
Bra005633
AT2G32040 (E=6e-235) | integral membrane transporter family protein (507 aa)
   
          0.515
Bra025250
AT3G27110 (E=3e-172) | peptidase M48 family protein (342 aa)
   
          0.514
Bra009503
AT5G03900 (E=3e-192) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- chloroplast envelope; EXPRESSED IN- 22 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- FeS cluster biogenesis (InterPro-IPR000361); Has 98 Blast hits to 98 proteins in 40 species- Archae - 0; Bacteria - 53; Metazoa - 0; Fungi - 0; Plants - 42; Viruses - 0; Other Eukaryotes - 3 (source- NCBI BLink). (426 aa)
   
          0.513
Bra037380
AT4G01150 (E=7e-064) | unknown protein (162 aa)
   
        0.511
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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