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Bra000457 protein (Brassica rapa) - STRING interaction network
"Bra000457" - AT2G47650 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000457AT2G47650 (E=2e-220) UXS4 | UXS4 (UDP-XYLOSE SYNTHASE 4); UDP-glucuronate decarboxylase/ catalytic (438 aa)    
Predicted Functional Partners:
Bra008695
AT5G15490 (E=1e-275) | UDP-glucose 6-dehydrogenase, putative (480 aa)
   
 
  0.965
Bra006303
AT5G15490 (E=4e-277) | UDP-glucose 6-dehydrogenase, putative (480 aa)
   
 
  0.965
Bra032409
AT1G30620 (E=2e-229) HSR8, MUR4, UXE1 | MUR4 (MURUS 4); UDP-arabinose 4-epimerase/ catalytic (419 aa)
   
0.934
Bra020917
AT4G20460 (E=1e-223) | NAD-dependent epimerase/dehydratase family protein (411 aa)
   
0.934
Bra018643
AT1G08200 (E=3e-221) AXS2 | AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2); UDP-glucuronate decarboxylase (389 aa)
   
   
 
0.908
Bra034374
AT2G27860 (E=5e-225) AXS1 | AXS1 (UDP-D-apiose/UDP-D-xylose synthase 1); NAD or NADH binding / UDP-glucuronate decarboxylase (389 aa)
   
   
 
0.908
Bra030716
AT1G08200 (E=1e-222) AXS2 | AXS2 (UDP-D-APIOSE/UDP-D-XYLOSE SYNTHASE 2); UDP-glucuronate decarboxylase (390 aa)
   
   
 
0.908
Bra033344
AT1G02730 (E=0.0) ATCSLD5, CSLD5 | ATCSLD5; 1,4-beta-D-xylan synthase/ cellulose synthase (1179 aa)
       
  0.905
Bra032022
AT3G03050 (E=0.0) CSLD3, KJK, ATCSLD3 | CSLD3 (CELLULOSE SYNTHASE-LIKE D3); cellulose synthase/ transferase, transferring glycosyl groups (1146 aa)
       
  0.905
Bra023588
AT5G16910 (E=0.0) ATCSLD2, CSLD2 | CSLD2 (CELLULOSE-SYNTHASE LIKE D2); cellulose synthase/ transferase, transferring glycosyl groups (1140 aa)
       
  0.905
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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