STRINGSTRING
Bra000463 protein (Brassica rapa) - STRING interaction network
"Bra000463" - AT2G47820 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000463AT2G47820 (E=5e-192) | unknown protein (707 aa)    
Predicted Functional Partners:
Bra011643
AT4G35840 (E=2e-124) | zinc finger (C3HC4-type RING finger) family protein (237 aa)
           
  0.418
Bra002084
AT2G17730 (E=1e-098) | zinc finger (C3HC4-type RING finger) family protein (239 aa)
           
  0.418
Bra018540
AT4G02560 (E=0.0) LD | LD (luminidependens); transcription factor (813 aa)
           
  0.414
Bra012815
AT3G52250 (E=0.0) | DNA binding / transcription factor (1904 aa)
           
  0.414
Bra006915
AT3G52250 (E=0.0) | DNA binding / transcription factor (1643 aa)
           
  0.414
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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