STRINGSTRING
Bra000466 protein (Brassica rapa) - STRING interaction network
"Bra000466" - AT2G47850 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000466AT2G47850 (E=6e-171) | zinc finger (CCCH-type) family protein (404 aa)    
Predicted Functional Partners:
Bra027816
AT1G60080 (E=1e-130) | 3’ exoribonuclease family domain 1-containing protein (301 aa)
       
    0.697
Bra007620
AT3G61620 (E=3e-126) RRP41 | RRP41; 3’-5’-exoribonuclease/ RNA binding (240 aa)
       
    0.603
Bra003461
AT3G61620 (E=3e-065) RRP41 | RRP41; 3’-5’-exoribonuclease/ RNA binding (156 aa)
       
    0.603
Bra025583
AT5G13570 (E=6e-113) DCP2, TDT, ATDCP2 | DCP2 (DECAPPING 2); hydrolase/ m7G(5’)pppN diphosphatase/ mRNA binding / protein homodimerization (291 aa)
     
  0.596
Bra025582
AT5G13570 (E=7e-085) DCP2, TDT, ATDCP2 | DCP2 (DECAPPING 2); hydrolase/ m7G(5’)pppN diphosphatase/ mRNA binding / protein homodimerization (289 aa)
     
  0.596
Bra023421
AT5G13570 (E=1e-142) DCP2, TDT, ATDCP2 | DCP2 (DECAPPING 2); hydrolase/ m7G(5’)pppN diphosphatase/ mRNA binding / protein homodimerization (325 aa)
     
  0.596
Bra008818
AT5G13570 (E=1e-147) DCP2, TDT, ATDCP2 | DCP2 (DECAPPING 2); hydrolase/ m7G(5’)pppN diphosphatase/ mRNA binding / protein homodimerization (316 aa)
     
  0.596
Bra040025
AT3G07750 (E=6e-137) | 3’ exoribonuclease family domain 1-containing protein (288 aa)
       
    0.572
Bra029674
AT3G07750 (E=4e-144) | 3’ exoribonuclease family domain 1-containing protein (293 aa)
       
    0.572
Bra007540
AT3G60500 (E=1e-200) CER7, G3 | CER7 (ECERIFERUM 7); 3’-5’-exoribonuclease/ RNA binding (436 aa)
       
    0.572
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]