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Bra000468 protein (Brassica rapa) - STRING interaction network
"Bra000468" - AT2G29950 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000468AT2G29950 (E=1e-035) ELF4-L1 | ELF4-L1 (ELF4-Like 1) (138 aa)    
Predicted Functional Partners:
Bra007200
AT3G55920 (E=3e-107) | peptidyl-prolyl cis-trans isomerase, putative / cyclophilin, putative / rotamase, putative ; PPIases accelerate the folding of proteins. It catalyzes the cis-trans isomerization of proline imidic peptide bonds in oligopeptides (224 aa)
           
  0.544
Bra003224
AT3G55960 (E=4e-139) | NLI interacting factor (NIF) family protein (296 aa)
           
  0.479
Bra030294
AT2G21540 (E=1e-140) ATSFH3, SFH3 | SFH3 (SEC14-LIKE 3); phosphatidylinositol transporter (488 aa)
           
  0.456
Bra017027
AT3G55960 (E=3e-109) | NLI interacting factor (NIF) family protein (307 aa)
           
  0.449
Bra007203
AT3G55960 (E=8e-108) | NLI interacting factor (NIF) family protein (292 aa)
           
  0.449
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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