STRINGSTRING
Bra000475 protein (Brassica rapa) - STRING interaction network
"Bra000475" - AT2G29400 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000475AT2G29400 (E=3e-177) TOPP1, PP1-AT | TOPP1 (TYPE ONE PROTEIN PHOSPHATASE 1); protein serine/threonine phosphatase (318 aa)    
Predicted Functional Partners:
Bra021716
AT2G31305 (E=4e-027) INH3 | INH3 (INHIBITOR-3) (107 aa)
       
      0.615
Bra018261
AT2G31305 (E=3e-027) INH3 | INH3 (INHIBITOR-3) (104 aa)
       
      0.612
Bra031808
AT5G66240 (E=4e-169) | transducin family protein / WD-40 repeat family protein (335 aa)
     
 
    0.531
Bra023473
AT5G14530 (E=6e-182) | transducin family protein / WD-40 repeat family protein (332 aa)
     
 
    0.531
Bra012767
AT4G15760 (E=2e-190) MO1 | MO1 (MONOOXYGENASE 1); electron carrier/ oxidoreductase (398 aa)
           
  0.476
Bra007316
AT3G57280 (E=2e-098) | unknown protein (217 aa)
           
  0.473
Bra038068
AT4G15760 (E=3e-120) MO1 | MO1 (MONOOXYGENASE 1); electron carrier/ oxidoreductase (398 aa)
           
  0.446
Bra007142
AT3G55120 (E=2e-107) TT5, A11, CFI | TT5 (TRANSPARENT TESTA 5); chalcone isomerase (251 aa)
           
  0.408
Bra022476
AT1G65450 (E=4e-135) | transferase family protein (451 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (14%) [HD]