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Bra000480 protein (Brassica rapa) - STRING interaction network
"Bra000480" - AT2G28840 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000480AT2G28840 (E=3e-182) | ankyrin repeat family protein (493 aa)    
Predicted Functional Partners:
Bra026408
AT4G26700 (E=0.0) ATFIM1, FIM1 | ATFIM1; actin binding (1230 aa)
   
  0.929
Bra039210
AT2G23740 (E=5e-041) | nucleic acid binding / transcription factor/ zinc ion binding (306 aa)
     
  0.903
Bra012038
AT2G26990 (E=3e-221) FUS12, ATCSN2, COP12, CSN2 | FUS12 (FUSCA 12) (854 aa)
       
  0.888
Bra004709
AT2G42580 (E=3e-140) TTL3, VIT | TTL3 (TETRATRICOPETIDE-REPEAT THIOREDOXIN-LIKE 3); binding / protein binding (657 aa)
   
  0.869
Bra039532
AT3G47110 (E=2e-165) | leucine-rich repeat transmembrane protein kinase, putative (959 aa)
     
  0.868
Bra039531
AT3G47090 (E=6e-148) | leucine-rich repeat transmembrane protein kinase, putative (967 aa)
     
  0.868
Bra039525
AT5G44700 (E=0.0) EDA23, GSO2 | GSO2 (GASSHO 2); ATP binding / protein binding / protein kinase/ protein serine/threonine kinase/ protein tyrosine kinase (1243 aa)
     
  0.868
Bra039232
AT2G24130 (E=0.0) | leucine-rich repeat transmembrane protein kinase, putative (992 aa)
     
  0.868
Bra039063
AT3G28040 (E=0.0) | leucine-rich repeat transmembrane protein kinase, putative (1014 aa)
     
  0.868
Bra038911
AT3G51740 (E=2e-230) IMK2 | IMK2 (INFLORESCENCE MERISTEM RECEPTOR-LIKE KINASE 2); ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (805 aa)
     
  0.868
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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