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Bra000485 protein (Brassica rapa) - STRING interaction network
"Bra000485" - AT2G28605 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000485AT2G28605 (E=2e-085) | Encodes a PsbP domain-OEC23 like protein localized in thylakoid (peripheral-lumenal side). (240 aa)    
Predicted Functional Partners:
Bra015132
AT2G04039 (E=6e-070) | unknown protein (197 aa)
   
        0.529
Bra004962
AT2G46100 (E=1e-106) | unknown protein (248 aa)
   
          0.499
Bra013018
AT5G23120 (E=9e-198) HCF136 | HCF136; protein binding (404 aa)
   
        0.496
Bra007678
AT3G62410 (E=1e-054) CP12-2, CP12 | CP12-2; protein binding (130 aa)
   
          0.489
Bra000451
AT2G47400 (E=1e-059) CP12-1, CP12 | CP12-1 (126 aa)
   
          0.487
Bra021396
AT2G47400 (E=6e-049) CP12-1, CP12 | CP12-1 (124 aa)
   
          0.484
Bra003900
AT1G72030 (E=6e-098) | GCN5-related N-acetyltransferase (GNAT) family protein (249 aa)
   
        0.478
Bra040413
AT3G04890 (E=6e-088) | unknown protein (218 aa)
   
          0.477
Bra014946
AT3G23400 (E=6e-083) | plastid-lipid associated protein PAP / fibrillin family protein (277 aa)
   
          0.470
Bra011434
AT4G33350 (E=3e-124) | chloroplast inner membrane import protein Tic22, putative (266 aa)
   
          0.468
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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