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Bra000487 protein (Brassica rapa) - STRING interaction network
"Bra000487" - AT2G28550 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000487AT2G28550 (E=2e-131) RAP2.7, TOE1 | RAP2.7 (RELATED TO AP2.7); DNA binding / transcription factor (417 aa)    
Predicted Functional Partners:
Bra023112
AT2G37260 (E=2e-182) TTG2, ATWRKY44, WRKY44, DSL1 | TTG2 (TRANSPARENT TESTA GLABRA 2); transcription factor (420 aa)
       
      0.588
Bra005210
AT2G37260 (E=8e-101) TTG2, ATWRKY44, WRKY44, DSL1 | TTG2 (TRANSPARENT TESTA GLABRA 2); transcription factor (409 aa)
       
      0.588
Bra022685
AT5G53950 (E=4e-162) CUC2, ANAC098 | CUC2 (CUP-SHAPED COTYLEDON 2); transcription factor (367 aa)
           
  0.408
Bra003023
AT5G53950 (E=1e-155) CUC2, ANAC098 | CUC2 (CUP-SHAPED COTYLEDON 2); transcription factor (357 aa)
           
  0.408
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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