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Bra000495 protein (Brassica rapa) - STRING interaction network
"Bra000495" - AT2G28160 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000495AT2G28160 (E=2e-129) FIT1, ATBHLH029, FRU, BHLH029, ATBHLH29 | FRU (FER-LIKE REGULATOR OF IRON UPTAKE); DNA binding / transcription factor (308 aa)    
Predicted Functional Partners:
Bra029530
AT4G04920 (E=0.0) SFR6 | SFR6 (SENSITIVE TO FREEZING 6) (1277 aa)
       
      0.619
Bra022476
AT1G65450 (E=4e-135) | transferase family protein (451 aa)
           
  0.591
Bra037329
AT1G01580 (E=2e-277) FRO2, FRD1, ATFRO2 | FRO2 (FERRIC REDUCTION OXIDASE 2); ferric-chelate reductase (722 aa)
           
  0.556
Bra033252
AT1G01580 (E=0.0) FRO2, FRD1, ATFRO2 | FRO2 (FERRIC REDUCTION OXIDASE 2); ferric-chelate reductase (700 aa)
           
  0.556
Bra032640
AT1G01580 (E=0.0) FRO2, FRD1, ATFRO2 | FRO2 (FERRIC REDUCTION OXIDASE 2); ferric-chelate reductase (725 aa)
           
  0.556
Bra029389
AT5G23980 (E=0.0) ATFRO4, FRO4 | FRO4 (FERRIC REDUCTION OXIDASE 4); ferric-chelate reductase (698 aa)
           
  0.556
Bra031553
AT1G07110 (E=0.0) F2KP, ATF2KP, FKFBP | F2KP (FRUCTOSE-2,6-BISPHOSPHATASE); fructose-2,6-bisphosphate 2-phosphatase (748 aa)
           
  0.546
Bra028278
AT5G51820 (E=0.0) PGM, ATPGMP, PGM1, STF1 | PGM (PHOSPHOGLUCOMUTASE); phosphoglucomutase (628 aa)
           
  0.511
Bra039025
AT4G29130 (E=3e-241) ATHXK1, GIN2, HXK1 | HXK1 (HEXOKINASE 1); ATP binding / fructokinase/ glucokinase/ hexokinase (500 aa)
           
  0.495
Bra036699
AT4G29130 (E=2e-237) ATHXK1, GIN2, HXK1 | HXK1 (HEXOKINASE 1); ATP binding / fructokinase/ glucokinase/ hexokinase (499 aa)
           
  0.495
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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