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Bra000499 protein (Brassica rapa) - STRING interaction network
"Bra000499" - AT2G27900 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000499AT2G27900 (E=6e-281) | unknown protein (665 aa)    
Predicted Functional Partners:
Bra036299
AT4G02030 (E=2e-163) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Vps51/Vps67 (InterPro-IPR014812); BEST Arabidopsis thaliana protein match is- SEC5B (TAIR-AT1G21170.1); Has 386 Blast hits to 358 proteins in 130 species- Archae - 0; Bacteria - 5; Metazoa - 171; Fungi - 64; Plants - 54; Viruses - 4; Other Eukaryotes - 88 (source- NCBI BLink). (761 aa)
     
 
  0.916
Bra016149
AT1G71270 (E=0.0) POK, TTD8, ATVPS52 | POK (POKY POLLEN TUBE) (708 aa)
     
 
  0.914
Bra030486
AT1G50500 (E=0.0) HIT1, ATVPS53, VPS53 | HIT1 (HEAT-INTOLERANT 1); transporter (824 aa)
     
 
  0.907
Bra012539
AT4G19490 (E=9e-315) ATVPS54, VPS54 | protein binding (1035 aa)
     
 
  0.754
Bra025825
AT1G20540 (E=4e-201) | transducin family protein / WD-40 repeat family protein (351 aa)
       
      0.616
Bra018676
AT1G76260 (E=4e-180) | transducin family protein / WD-40 repeat family protein (340 aa)
       
      0.616
Bra015772
AT1G76260 (E=6e-187) | transducin family protein / WD-40 repeat family protein (350 aa)
       
      0.616
Bra015160
AT2G05170 (E=0.0) ATVPS11 | ATVPS11; binding / protein binding / transporter/ zinc ion binding (934 aa)
     
   
  0.420
Bra008405
AT1G79260 (E=8e-078) | unknown protein (158 aa)
           
  0.400
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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