STRINGSTRING
Bra000509 protein (Brassica rapa) - STRING interaction network
"Bra000509" - AT2G27490 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000509AT2G27490 (E=8e-114) ATCOAE | ATCOAE; ATP binding / dephospho-CoA kinase (229 aa)    
Predicted Functional Partners:
Bra039623
AT2G18250 (E=9e-071) ATCOAD | ATCOAD (4-phosphopantetheine adenylyltransferase); nucleotidyltransferase/ pantetheine-phosphate adenylyltransferase (176 aa)
       
  0.970
Bra040069
AT4G32180 (E=0.0) ATPANK2 | ATPANK2 (PANTOTHENATE KINASE 2); pantothenate kinase (899 aa)
       
  0.962
Bra011327
AT4G32180 (E=0.0) ATPANK2 | ATPANK2 (PANTOTHENATE KINASE 2); pantothenate kinase (910 aa)
       
  0.962
Bra037227
AT2G18250 (E=3e-040) ATCOAD | ATCOAD (4-phosphopantetheine adenylyltransferase); nucleotidyltransferase/ pantetheine-phosphate adenylyltransferase (101 aa)
       
  0.868
Bra022272
AT3G18030 (E=9e-114) ATHAL3A, HAL3A, HAL3, ATHAL3 | ATHAL3A; FMN binding / phosphopantothenoylcysteine decarboxylase (209 aa)
     
  0.815
Bra021287
AT3G18030 (E=2e-109) ATHAL3A, HAL3A, HAL3, ATHAL3 | ATHAL3A; FMN binding / phosphopantothenoylcysteine decarboxylase (566 aa)
     
  0.815
Bra018743
AT1G48610 (E=3e-012) | AT hook motif-containing protein (186 aa)
     
  0.815
Bra001695
AT3G18030 (E=2e-109) ATHAL3A, HAL3A, HAL3, ATHAL3 | ATHAL3A; FMN binding / phosphopantothenoylcysteine decarboxylase (210 aa)
     
  0.815
Bra027158
AT1G60440 (E=4e-164) ATCOAA, ATPANK1 | ATPANK1 (PANTOTHENATE KINASE 1); pantothenate kinase (582 aa)
       
  0.752
Bra028882
AT1G12350 (E=2e-146) ATCOAB | ATCOAB (4-phospho-panto-thenoylcysteine synthetase); catalytic/ phosphopantothenate--cysteine ligase (317 aa)
   
  0.715
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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