STRINGSTRING
Bra000510 protein (Brassica rapa) - STRING interaction network
"Bra000510" - AT2G27480 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000510AT2G27480 (E=2e-099) | calcium ion binding (223 aa)    
Predicted Functional Partners:
Bra037995
AT1G55350 (E=0.0) DEK1, ATDEK1 | DEK1 (DEFECTIVE KERNEL 1); calcium-dependent cysteine-type endopeptidase/ cysteine-type endopeptidase (2152 aa)
       
  0.940
Bra026779
AT1G15130 (E=0.0) | hydroxyproline-rich glycoprotein family protein (852 aa)
       
 
  0.862
Bra026162
AT1G15130 (E=0.0) | hydroxyproline-rich glycoprotein family protein (864 aa)
       
 
  0.862
Bra036832
AT3G51180 (E=3e-160) | zinc finger (CCCH-type) family protein (496 aa)
       
      0.620
Bra035040
AT1G78460 (E=4e-083) | SOUL heme-binding family protein (220 aa)
       
      0.613
Bra035039
AT1G17100 (E=1e-095) | SOUL heme-binding family protein (234 aa)
       
      0.613
Bra026004
AT1G17100 (E=5e-098) | SOUL heme-binding family protein (231 aa)
       
      0.613
Bra034018
AT1G67170 (E=2e-094) | unknown protein (306 aa)
       
      0.612
Bra004207
AT1G67170 (E=4e-107) | unknown protein (344 aa)
       
      0.612
Bra040770
AT1G32250 (E=7e-078) | calmodulin, putative (166 aa)
           
  0.447
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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