STRINGSTRING
Bra000515 protein (Brassica rapa) - STRING interaction network
"Bra000515" - AT2G27370 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000515AT2G27370 (E=3e-093) | integral membrane family protein (221 aa)    
Predicted Functional Partners:
Bra041024
AT3G11550 (E=3e-068) | integral membrane family protein (204 aa)
     
 
0.535
Bra001409
AT3G11550 (E=5e-065) | integral membrane family protein (204 aa)
     
 
0.529
Bra010306
AT4G30140 (E=2e-155) | GDSL-motif lipase/hydrolase family protein (350 aa)
           
  0.493
Bra010304
AT4G30140 (E=2e-158) | GDSL-motif lipase/hydrolase family protein (350 aa)
           
  0.493
Bra008708
AT5G15290 (E=2e-066) | integral membrane family protein (187 aa)
     
   
0.423
Bra006295
AT5G15290 (E=5e-073) | integral membrane family protein (187 aa)
     
   
0.423
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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