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Bra000520 protein (Brassica rapa) - STRING interaction network
"Bra000520" - AT5G22110 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000520AT5G22110 (E=5e-252) ATDPB2, CYL2 | ATDPB2 (ARABIDOPSIS THALIANA DNA POLYMERASE EPSILON SUBUNIT B2); DNA binding / DNA-directed DNA polymerase/ nucleic acid binding ; Participates in DNA repair and in chromosomal DNA replication (523 aa)    
Predicted Functional Partners:
Bra018641
AT2G27120 (E=0.0) POL2B, TIL2 | TIL2 (TILTED 2); DNA binding / DNA-directed DNA polymerase/ nucleic acid binding / nucleotide binding / zinc ion binding (2128 aa)
     
  0.998
Bra012132
AT5G67100 (E=0.0) ICU2 | ICU2 (INCURVATA2); DNA-directed DNA polymerase (1225 aa)
     
  0.996
Bra026562
AT5G67100 (E=0.0) ICU2 | ICU2 (INCURVATA2); DNA-directed DNA polymerase (1329 aa)
     
  0.996
Bra012016
AT2G27470 (E=3e-045) NF-YB11 | NF-YB11 (NUCLEAR FACTOR Y, SUBUNIT B11); transcription factor (221 aa)
     
  0.995
Bra026951
AT1G12840 (E=3e-192) DET3, ATVHA-C | DET3 (DE-ETIOLATED 3); proton-transporting ATPase, rotational mechanism (569 aa)
     
  0.994
Bra015098
AT3G25100 (E=1e-292) CDC45 | CDC45 (cell division cycle 45) (581 aa)
     
  0.990
Bra013232
AT3G25100 (E=3e-297) CDC45 | CDC45 (cell division cycle 45) (593 aa)
     
  0.990
Bra024253
AT5G63960 (E=0.0) EMB2780 | EMB2780 (EMBRYO DEFECTIVE 2780); DNA binding / DNA-directed DNA polymerase/ nucleic acid binding / nucleotide binding (1150 aa)
     
  0.980
Bra004084
AT1G67500 (E=0.0) ATREV3 | ATREV3 (ARABIDOPSIS THALIANA RECOVERY PROTEIN 3); DNA binding / DNA-directed DNA polymerase (1822 aa)
     
  0.978
Bra015344
AT1G04730 (E=0.0) | AAA-type ATPase family protein (1622 aa)
     
      0.972
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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