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Bra000528 protein (Brassica rapa) - STRING interaction network
"Bra000528" - AT2G27050 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000528AT2G27050 (E=5e-246) EIL1 | EIL1 (ETHYLENE-INSENSITIVE3-LIKE 1); transcription factor/ transcription regulator (571 aa)    
Predicted Functional Partners:
Bra009539
AT5G03280 (E=0.0) EIN2, PIR2, CKR1, ERA3, ORE3, ORE2, ATEIN2 | EIN2 (ETHYLENE INSENSITIVE 2); transporter (1311 aa)
         
  0.954
Bra034254
AT2G25490 (E=5e-294) EBF1, FBL6 | EBF1 (EIN3-BINDING F BOX PROTEIN 1); protein binding / ubiquitin-protein ligase (622 aa)
       
  0.878
Bra036542
AT5G25350 (E=7e-267) EBF2 | EBF2 (EIN3-BINDING F BOX PROTEIN 2); protein binding (616 aa)
       
  0.866
Bra035858
AT5G63110 (E=7e-251) HDA6, AXE1, ATHDA6, RTS1, RPD3B, SIL1 | HDA6 (HISTONE DEACETYLASE 6); histone deacetylase (470 aa)
       
 
  0.841
Bra023745
AT3G23240 (E=8e-076) ERF1, ATERF1 | ERF1 (ETHYLENE RESPONSE FACTOR 1); DNA binding / transcription activator/ transcription factor (210 aa)
         
  0.832
Bra023745.1-P
AT3G23240 (E=8e-076) ERF1, ATERF1 | ERF1 (ETHYLENE RESPONSE FACTOR 1); DNA binding / transcription activator/ transcription factor (210 aa)
         
  0.832
Bra021281
AT3G17860 (E=3e-154) JAZ3, JAI3, TIFY6B | JAZ3 (JASMONATE-ZIM-DOMAIN PROTEIN 3) (353 aa)
       
      0.829
Bra009835
AT5G25350 (E=6e-292) EBF2 | EBF2 (EIN3-BINDING F BOX PROTEIN 2); protein binding (622 aa)
       
  0.795
Bra031065
AT1G74950 (E=7e-073) JAZ2, TIFY10B | TIFY10B (273 aa)
       
 
  0.735
Bra025713
AT1G19180 (E=8e-084) JAZ1, TIFY10A | JAZ1 (JASMONATE-ZIM-DOMAIN PROTEIN 1); protein binding (254 aa)
       
 
  0.735
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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