STRINGSTRING
Bra000535 protein (Brassica rapa) - STRING interaction network
"Bra000535" - AT2G26610 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000535AT2G26610 (E=0.0) | FUNCTIONS IN- molecular_function unknown; LOCATED IN- chloroplast; CONTAINS InterPro DOMAIN/s- WD40 repeat-like (InterPro-IPR011046), WD40/YVTN repeat-like (InterPro-IPR015943); BEST Arabidopsis thaliana protein match is- transducin family protein / WD-40 repeat family protein (TAIR-AT3G33530.1); Has 123 Blast hits to 101 proteins in 39 species- Archae - 0; Bacteria - 0; Metazoa - 87; Fungi - 0; Plants - 17; Viruses - 0; Other Eukaryotes - 19 (source- NCBI BLink). (1231 aa)    
Predicted Functional Partners:
Bra016559
AT1G18335 (E=2e-097) | GCN5-related N-acetyltransferase (GNAT) family protein (251 aa)
       
      0.737
Bra035332
AT5G42790 (E=6e-131) PAF1, ATPSM30 | PAF1; endopeptidase/ peptidase/ threonine-type endopeptidase (271 aa)
       
 
  0.621
Bra027456
AT5G42790 (E=2e-131) PAF1, ATPSM30 | PAF1; endopeptidase/ peptidase/ threonine-type endopeptidase (275 aa)
       
 
  0.621
Bra014068
AT1G47250 (E=1e-130) PAF2 | PAF2; endopeptidase/ peptidase/ threonine-type endopeptidase (270 aa)
       
 
  0.621
Bra031191
AT2G21470 (E=0.0) SAE2, ATSAE2, EMB2764 | SAE2 (SUMO-ACTIVATING ENZYME 2); SUMO activating enzyme (630 aa)
       
      0.619
Bra030297
AT2G21470 (E=0.0) SAE2, ATSAE2, EMB2764 | SAE2 (SUMO-ACTIVATING ENZYME 2); SUMO activating enzyme (627 aa)
       
      0.619
Bra016049
AT1G72560 (E=0.0) PSD | PSD (PAUSED); nucleobase, nucleoside, nucleotide and nucleic acid transmembrane transporter/ tRNA binding (989 aa)
       
      0.619
Bra008039
AT1G72560 (E=1e-015) PSD | PSD (PAUSED); nucleobase, nucleoside, nucleotide and nucleic acid transmembrane transporter/ tRNA binding (56 aa)
       
      0.619
Bra040713
AT1G47250 (E=1e-015) PAF2 | PAF2; endopeptidase/ peptidase/ threonine-type endopeptidase (132 aa)
       
 
  0.618
Bra039563
AT4G15160 (E=3e-040) | lipid binding / structural constituent of cell wall (291 aa)
       
      0.613
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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