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Bra000538 protein (Brassica rapa) - STRING interaction network
"Bra000538" - AT2G26580 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000538AT2G26580 (E=7e-086) YAB5 | YAB5 (YABBY5); transcription factor (164 aa)    
Predicted Functional Partners:
Bra033844
AT1G32240 (E=6e-140) KAN2 | KAN2 (KANADI 2); DNA binding / transcription factor (392 aa)
           
  0.456
Bra023254
AT1G32240 (E=7e-109) KAN2 | KAN2 (KANADI 2); DNA binding / transcription factor (366 aa)
           
  0.456
Bra023570
AT5G16560 (E=3e-101) KAN, KAN1 | KAN (KANADI); transcription factor (398 aa)
           
  0.408
Bra008613
AT5G16560 (E=3e-106) KAN, KAN1 | KAN (KANADI); transcription factor (291 aa)
           
  0.408
Bra005177
AT2G37630 (E=1e-161) ATPHAN, AS1, ATMYB91, MYB91 | AS1 (ASYMMETRIC LEAVES 1); DNA binding / protein homodimerization/ transcription factor (361 aa)
           
  0.406
Bra000011
AT2G37630 (E=8e-081) ATPHAN, AS1, ATMYB91, MYB91 | AS1 (ASYMMETRIC LEAVES 1); DNA binding / protein homodimerization/ transcription factor (347 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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