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Bra000541 protein (Brassica rapa) - STRING interaction network
"Bra000541" - AT2G26450 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000541AT2G26450 (E=2e-290) | pectinesterase family protein (603 aa)    
Predicted Functional Partners:
Bra000327
AT1G43080 (E=2e-163) | glycoside hydrolase family 28 protein / polygalacturonase (pectinase) family protein (474 aa)
       
  0.699
Bra014772
AT3G55140 (E=1e-188) | pectate lyase family protein (331 aa)
       
  0.673
Bra030510
AT1G02790 (E=1e-201) PGA4 | PGA4 (POLYGALACTURONASE 4); polygalacturonase (420 aa)
   
 
  0.600
Bra010873
AT1G02790 (E=2e-197) PGA4 | PGA4 (POLYGALACTURONASE 4); polygalacturonase (421 aa)
   
 
  0.600
Bra010872
AT1G02790 (E=8e-200) PGA4 | PGA4 (POLYGALACTURONASE 4); polygalacturonase (420 aa)
   
 
  0.600
Bra040032
AT3G07820 (E=4e-216) | polygalacturonase 3 (PGA3) / pectinase (396 aa)
   
 
  0.590
Bra033347
AT1G02790 (E=2e-198) PGA4 | PGA4 (POLYGALACTURONASE 4); polygalacturonase (420 aa)
   
 
  0.583
Bra032585
AT1G02790 (E=9e-191) PGA4 | PGA4 (POLYGALACTURONASE 4); polygalacturonase (418 aa)
   
 
  0.583
Bra029682
AT3G14040 (E=2e-183) | exopolygalacturonase / galacturan 1,4-alpha-galacturonidase / pectinase (476 aa)
   
 
  0.583
Bra040034
AT3G07840 (E=1e-190) | polygalacturonase, putative / pectinase, putative (397 aa)
       
  0.578
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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