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Bra000554 protein (Brassica rapa) - STRING interaction network
"Bra000554" - AT2G25740 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000554AT2G25740 (E=2e-214) | ATP-dependent protease La (LON) domain-containing protein (540 aa)    
Predicted Functional Partners:
Bra029577
AT4G05420 (E=0.0) DDB1A | DDB1A (DAMAGED DNA BINDING PROTEIN 1A); DNA binding / protein binding (1086 aa)
       
 
  0.935
Bra020884
AT4G21100 (E=0.0) DDB1B | DDB1B (Damaged DNA Binding Protein 1 B); damaged DNA binding / protein binding (1282 aa)
       
 
  0.935
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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