STRINGSTRING
Bra000557 protein (Brassica rapa) - STRING interaction network
"Bra000557" - AT2G26150 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000557AT2G26150 (E=2e-155) ATHSFA2, HSFA2 | ATHSFA2; DNA binding / transcription factor (348 aa)    
Predicted Functional Partners:
Bra013224
AT3G25230 (E=9e-269) ROF1, ATFKBP62, FKBP62 | ROF1 (ROTAMASE FKBP 1); FK506 binding / calmodulin binding / peptidyl-prolyl cis-trans isomerase (567 aa)
     
  0.858
Bra013774
AT4G24190 (E=0.0) SHD, HSP90.7 | SHD (SHEPHERD); ATP binding / unfolded protein binding (822 aa)
       
  0.844
Bra010500
AT4G24190 (E=8e-191) SHD, HSP90.7 | SHD (SHEPHERD); ATP binding / unfolded protein binding (786 aa)
       
  0.844
Bra035593
AT5G56030 (E=1e-245) HSP81-2, ERD8, HSP90.2 | HSP81-2 (HEAT SHOCK PROTEIN 81-2); ATP binding (672 aa)
     
  0.839
Bra028952
AT5G56010 (E=0.0) HSP81-3 | HSP81-3; ATP binding / unfolded protein binding (699 aa)
     
  0.839
Bra028924
AT5G56030 (E=0.0) HSP81-2, ERD8, HSP90.2 | HSP81-2 (HEAT SHOCK PROTEIN 81-2); ATP binding (699 aa)
     
  0.839
Bra012763
AT4G15802 (E=1e-027) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; CONTAINS InterPro DOMAIN/s- Heat shock factor binding 1 (InterPro-IPR009643); Has 178 Blast hits to 178 proteins in 62 species- Archae - 0; Bacteria - 0; Metazoa - 122; Fungi - 0; Plants - 37; Viruses - 0; Other Eukaryotes - 19 (source- NCBI BLink). (109 aa)
       
  0.838
Bra040027
AT3G07770 (E=0.0) | ATP binding (804 aa)
       
  0.830
Bra035599
AT5G56030 (E=1e-179) HSP81-2, ERD8, HSP90.2 | HSP81-2 (HEAT SHOCK PROTEIN 81-2); ATP binding (563 aa)
       
  0.830
Bra029677
AT3G07770 (E=3e-154) | ATP binding (726 aa)
       
  0.830
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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