STRINGSTRING
Bra000560 protein (Brassica rapa) - STRING interaction network
"Bra000560" - AT4G00050 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000560AT4G00050 (E=7e-110) UNE10 | UNE10 (unfertilized embryo sac 10); DNA binding / transcription factor (388 aa)    
Predicted Functional Partners:
Bra005404
AT2G34640 (E=1e-244) PTAC12 | PTAC12 (PLASTID TRANSCRIPTIONALLY ACTIVE12) (525 aa)
       
      0.613
Bra029523
AT4G04880 (E=4e-174) | adenosine/AMP deaminase family protein (355 aa)
           
  0.506
Bra033222
AT1G02080 (E=0.0) | transcriptional regulator-related (2419 aa)
           
  0.453
Bra032664
AT1G02080 (E=0.0) | transcriptional regulator-related (2295 aa)
           
  0.453
Bra028531
AT1G02080 (E=0.0) | transcriptional regulator-related (2333 aa)
           
  0.453
Bra036442
AT3G03690 (E=4e-141) UNE7 | UNE7 (unfertilized embryo sac 7); acetylglucosaminyltransferase/ transferase, transferring glycosyl groups (281 aa)
           
  0.406
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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