STRINGSTRING
Bra000568 protein (Brassica rapa) - STRING interaction network
"Bra000568" - AT2G24210 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000568AT2G24210 (E=4e-256) TPS10 | TPS10 (terpene synthase 10); (E)-beta-ocimene synthase/ myrcene synthase (595 aa)    
Predicted Functional Partners:
Bra022982
AT2G34630 (E=2e-164) GPPS, GPS1 | geranyl diphosphate synthase, putative / GPPS, putative / dimethylallyltransferase, putative / prenyl transferase, putative (392 aa)
         
  0.809
Bra005405
AT2G34630 (E=3e-174) GPPS, GPS1 | geranyl diphosphate synthase, putative / GPPS, putative / dimethylallyltransferase, putative / prenyl transferase, putative (674 aa)
         
  0.809
Bra022156
AT5G47770 (E=6e-190) FPS1 | FPS1 (FARNESYL DIPHOSPHATE SYNTHASE 1); dimethylallyltranstransferase/ geranyltranstransferase (342 aa)
         
    0.797
Bra028096
AT2G18620 (E=2e-155) | geranylgeranyl pyrophosphate synthase, putative / GGPP synthetase, putative / farnesyltranstransferase, putative (359 aa)
         
  0.689
Bra011709
AT4G36810 (E=1e-164) GGPS1 | GGPS1 (GERANYLGERANYL PYROPHOSPHATE SYNTHASE 1); farnesyltranstransferase (363 aa)
         
  0.689
Bra011898
AT4G38460 (E=2e-138) GGR | GGR (geranylgeranyl reductase); farnesyltranstransferase (322 aa)
         
  0.676
Bra034620
AT4G34350 (E=7e-251) CLB6, ISPH, HDR | HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE); 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase/ 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (572 aa)
         
  0.607
Bra011522
AT4G34350 (E=2e-246) CLB6, ISPH, HDR | HDR (4-HYDROXY-3-METHYLBUT-2-ENYL DIPHOSPHATE REDUCTASE); 4-hydroxy-3-methylbut-2-en-1-yl diphosphate reductase/ 4-hydroxy-3-methylbut-2-en-1-yl diphosphate synthase (462 aa)
         
  0.607
Bra027079
AT1G61680 (E=2e-039) TPS14, ATTPS14 | TPS14 (TERPENE SYNTHASE 14); S-linalool synthase (333 aa)
     
 
0.509
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (17%) [HD]