STRINGSTRING
Bra000569 protein (Brassica rapa) - STRING interaction network
"Bra000569" - AT5G51600 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000569AT5G51600 (E=2e-021) PLE, ATMAP65-3, MAP65-3 | PLE (PLEIADE); microtubule binding (165 aa)    
Predicted Functional Partners:
Bra029717
AT3G23890 (E=1e-178) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (718 aa)
     
        0.933
Bra011071
AT3G23890 (E=0.0) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1412 aa)
     
        0.933
Bra035686
AT2G28620 (E=0.0) | kinesin motor protein-related (1047 aa)
     
  0.918
Bra033832
AT3G45850 (E=0.0) | kinesin motor protein-related (1052 aa)
     
  0.918
Bra033490
AT4G14330 (E=0.0) | phragmoplast-associated kinesin-related protein 2 (PAKRP2) (874 aa)
     
  0.918
Bra023054
AT2G36200 (E=1e-069) | kinesin motor protein-related (243 aa)
     
  0.918
Bra021972
AT2G37420 (E=3e-045) | kinesin motor protein-related (192 aa)
     
  0.918
Bra017256
AT2G36200 (E=0.0) | kinesin motor protein-related (1009 aa)
     
  0.918
Bra017189
AT2G37420 (E=0.0) | kinesin motor protein-related (1041 aa)
     
  0.918
Bra010761
AT4G14330 (E=2e-246) | phragmoplast-associated kinesin-related protein 2 (PAKRP2) (686 aa)
     
  0.918
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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