STRINGSTRING
Bra000571 protein (Brassica rapa) - STRING interaction network
"Bra000571" - AT2G23810 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000571AT2G23810 (E=1e-118) TET8 | TET8 (TETRASPANIN8) (270 aa)    
Predicted Functional Partners:
Bra009434
AT5G04720 (E=0.0) ADR1-L2 | ADR1-L2 (ADR1-like 2); ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding (811 aa)
     
   
  0.461
Bra034556
AT4G33300 (E=0.0) ADR1-L1 | ADR1-L1 (ADR1-like 1); ATP binding / protein binding (821 aa)
     
   
  0.422
Bra011432
AT5G04720 (E=2e-277) ADR1-L2 | ADR1-L2 (ADR1-like 2); ATP binding / nucleoside-triphosphatase/ nucleotide binding / protein binding (807 aa)
     
   
  0.422
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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