STRINGSTRING
Bra000573 protein (Brassica rapa) - STRING interaction network
"Bra000573" - AT2G23150 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000573AT2G23150 (E=3e-268) NRAMP3, ATNRAMP3 | NRAMP3 (NATURAL RESISTANCE-ASSOCIATED MACROPHAGE PROTEIN 3); inorganic anion transmembrane transporter/ manganese ion transmembrane transporter/ metal ion transmembrane transporter (511 aa)    
Predicted Functional Partners:
Bra031701
AT1G10130 (E=0.0) ECA3, ATECA3 | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3); calcium-transporting ATPase/ calmodulin binding / manganese-transporting ATPase/ peroxidase ; This magnesium-dependent enzyme catalyzes the hydrolysis of ATP coupled with the transport of calcium (1085 aa)
     
 
  0.671
Bra037404
AT4G00900 (E=0.0) ECA2, ATECA2 | ECA2 (ER-TYPE CA2+-ATPASE 2); calcium-transporting ATPase (1054 aa)
     
 
  0.669
Bra031593
AT1G07670 (E=0.0) ATECA4, ECA4 | calcium-transporting ATPase (1060 aa)
     
 
  0.669
Bra031583
AT1G07670 (E=0.0) ATECA4, ECA4 | calcium-transporting ATPase (964 aa)
     
 
  0.669
Bra029645
AT1G07670 (E=0.0) ATECA4, ECA4 | calcium-transporting ATPase (1194 aa)
     
 
  0.669
Bra019960
AT1G10130 (E=0.0) ECA3, ATECA3 | ECA3 (ENDOPLASMIC RETICULUM-TYPE CALCIUM-TRANSPORTING ATPASE 3); calcium-transporting ATPase/ calmodulin binding / manganese-transporting ATPase/ peroxidase (1045 aa)
     
 
  0.669
Bra018690
AT1G07810 (E=9e-053) ECA1, ATECA1, ACA3 | ECA1 (ER-TYPE CA2+-ATPASE 1); calcium-transporting ATPase (249 aa)
     
 
  0.669
Bra026154
AT1G15220 (E=2e-072) ATCCMH, CCMH | CCMH; oxidoreductase (208 aa)
       
      0.612
Bra016668
AT1G15220 (E=1e-072) ATCCMH, CCMH | CCMH; oxidoreductase (159 aa)
       
      0.612
Bra009347
AT5G08530 (E=5e-233) CI51 | CI51 (51 kDa subunit of complex I); 4 iron, 4 sulfur cluster binding / FMN binding / NAD or NADH binding / NADH dehydrogenase (ubiquinone)/ oxidoreductase, acting on NADH or NADPH (407 aa)
       
      0.612
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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