STRINGSTRING
Bra000574 protein (Brassica rapa) - STRING interaction network
"Bra000574" - AT2G23090 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000574AT2G23090 (E=3e-038) | unknown protein (78 aa)    
Predicted Functional Partners:
Bra039141
AT3G01150 (E=2e-209) PTB, ATPTB1, PTB1 | PTB1 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 1); RNA binding / nucleic acid binding / nucleotide binding (398 aa)
           
  0.468
Bra029091
AT5G53180 (E=2e-187) ATPTB2, PTB2 | PTB2 (POLYPYRIMIDINE TRACT-BINDING PROTEIN 2); RNA binding / nucleic acid binding / nucleotide binding (422 aa)
           
  0.468
Bra011516
AT4G34270 (E=1e-125) | TIP41-like family protein (306 aa)
           
  0.468
Bra029853
AT3G10572 (E=2e-122) | 3-phosphoinositide-dependent protein kinase-1, putative (325 aa)
           
  0.410
Bra018814
AT1G49590 (E=6e-097) | formin-binding protein-related (246 aa)
           
  0.410
Bra001369
AT3G10572 (E=1e-125) | 3-phosphoinositide-dependent protein kinase-1, putative (330 aa)
           
  0.410
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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