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Bra000575 protein (Brassica rapa) - STRING interaction network
"Bra000575" - AT2G22840 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000575AT2G22840 (E=6e-226) AtGRF1 | AtGRF1 (GROWTH-REGULATING FACTOR 1); transcription activator (518 aa)    
Predicted Functional Partners:
Bra036131
AT5G28640 (E=2e-050) AN3, GIF, GIF1 | AN3 (ANGUSTIFOLIA 3); protein binding / transcription coactivator (203 aa)
     
 
  0.620
Bra010002
AT5G28640 (E=7e-050) AN3, GIF, GIF1 | AN3 (ANGUSTIFOLIA 3); protein binding / transcription coactivator (203 aa)
     
 
  0.620
Bra020616
AT5G28640 (E=8e-038) AN3, GIF, GIF1 | AN3 (ANGUSTIFOLIA 3); protein binding / transcription coactivator (204 aa)
     
 
  0.557
Bra036357
AT3G25910 (E=3e-043) | zinc ion binding (491 aa)
           
  0.468
Bra026577
AT2G02850 (E=2e-061) ARPN | ARPN (PLANTACYANIN); copper ion binding / electron carrier (129 aa)
           
  0.468
Bra025173
AT3G25910 (E=6e-047) | zinc ion binding (318 aa)
           
  0.468
Bra014501
AT3G60280 (E=2e-041) UCC3 | UCC3 (UCLACYANIN 3); copper ion binding / electron carrier (206 aa)
           
  0.468
Bra007522
AT3G60280 (E=2e-040) UCC3 | UCC3 (UCLACYANIN 3); copper ion binding / electron carrier (241 aa)
           
  0.468
Bra025816
AT1G20380 (E=0.0) | prolyl oligopeptidase, putative / prolyl endopeptidase, putative / post-proline cleaving enzyme, putative (731 aa)
           
  0.459
Bra015783
AT1G76140 (E=0.0) | serine-type endopeptidase/ serine-type peptidase (807 aa)
           
  0.459
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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