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Bra000577 protein (Brassica rapa) - STRING interaction network
"Bra000577" - AT3G43590 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000577AT3G43590 (E=1e-034) | zinc knuckle (CCHC-type) family protein (642 aa)    
Predicted Functional Partners:
Bra038910
AT3G51620 (E=9e-294) | unknown protein (795 aa)
     
 
  0.770
Bra016988
AT2G40520 (E=2e-115) | nucleotidyltransferase family protein (452 aa)
     
 
  0.770
Bra014698
AT3G56320 (E=2e-183) | nucleotidyltransferase family protein (536 aa)
     
 
  0.770
Bra012846
AT3G51620 (E=1e-159) | unknown protein (604 aa)
     
 
  0.770
Bra007236
AT3G56320 (E=2e-196) | nucleotidyltransferase family protein (586 aa)
     
 
  0.770
Bra004576
AT2G40520 (E=3e-177) | nucleotidyltransferase family protein (500 aa)
     
 
  0.770
Bra003035
AT5G53770 (E=3e-222) | nucleotidyltransferase family protein (521 aa)
     
 
  0.770
Bra000561
AT4G00060 (E=0.0) MEE44 | MEE44 (maternal effect embryo arrest 44); nucleotidyltransferase (1455 aa)
     
 
  0.770
Bra035426
AT1G59760 (E=0.0) | ATP-dependent RNA helicase, putative (620 aa)
     
 
  0.762
Bra035425
AT1G59760 (E=1e-203) | ATP-dependent RNA helicase, putative (378 aa)
     
 
  0.762
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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