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Bra000581 protein (Brassica rapa) - STRING interaction network
"Bra000581" - AT2G21550 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
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proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000581AT2G21550 (E=6e-203) | bifunctional dihydrofolate reductase-thymidylate synthase, putative / DHFR-TS, putative (452 aa)    
Predicted Functional Partners:
Bra032979
AT3G27060 (E=5e-184) TSO2 | TSO2 (TSO meaning ’ugly’ in Chinese); oxidoreductase/ ribonucleoside-diphosphate reductase/ transition metal ion binding (332 aa)
   
   
  0.995
Bra019279
AT3G27060 (E=1e-011) TSO2 | TSO2 (TSO meaning ’ugly’ in Chinese); oxidoreductase/ ribonucleoside-diphosphate reductase/ transition metal ion binding (99 aa)
   
   
  0.995
Bra014962
AT3G23580 (E=1e-182) RNR2, RNR2A | RNR2A (RIBONUCLEOTIDE REDUCTASE 2A); ribonucleoside-diphosphate reductase (343 aa)
   
   
  0.995
Bra012265
AT2G32295 (E=6e-044) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- integral to membrane; CONTAINS InterPro DOMAIN/s- EXS, C-terminal (InterPro-IPR004342); BEST Arabidopsis thaliana protein match is- EXS family protein / ERD1/XPR1/SYG1 family protein (TAIR-AT5G35730.1); Has 582 Blast hits to 577 proteins in 138 species- Archae - 0; Bacteria - 0; Metazoa - 223; Fungi - 177; Plants - 106; Viruses - 0; Other Eukaryotes - 76 (source- NCBI BLink). (213 aa)
   
   
  0.995
Bra031571
AT1G07370 (E=5e-142) PCNA1 | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor/ protein binding ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (263 aa)
     
 
  0.993
Bra018377
AT1G07370 (E=2e-144) PCNA1 | PCNA1 (PROLIFERATING CELLULAR NUCLEAR ANTIGEN); DNA binding / DNA polymerase processivity factor/ protein binding ; This protein is an auxiliary protein of DNA polymerase delta and is involved in the control of eukaryotic DNA replication by increasing the polymerase’s processibility during elongation of the leading strand (263 aa)
     
 
  0.993
Bra013169
AT2G07690 (E=0.0) MCM5 | minichromosome maintenance family protein / MCM family protein (727 aa)
     
   
  0.992
Bra013068
AT2G16440 (E=0.0) MCM4 | DNA replication licensing factor, putative (825 aa)
     
   
  0.991
Bra029903
AT3G48540 (E=1e-116) | cytidine/deoxycytidylate deaminase family protein (226 aa)
   
 
  0.986
Bra019830
AT1G11790 (E=3e-196) ADT1 | ADT1 (arogenate dehydratase 1); arogenate dehydratase/ prephenate dehydratase ; The glycine cleavage system catalyzes the degradation of glycine (1130 aa)
   
 
  0.985
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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