STRINGSTRING
Bra000584 protein (Brassica rapa) - STRING interaction network
"Bra000584" - AT2G21050 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000584AT2G21050 (E=2e-259) | amino acid permease, putative (483 aa)    
Predicted Functional Partners:
Bra032954
AT3G26810 (E=0.0) AFB2 | AFB2 (AUXIN SIGNALING F-BOX 2); auxin binding / ubiquitin-protein ligase (575 aa)
       
 
  0.532
Bra026953
AT1G12820 (E=2e-284) AFB3 | AFB3 (AUXIN SIGNALING F-BOX 3); auxin binding / ubiquitin-protein ligase (578 aa)
       
 
  0.532
Bra016754
AT1G12820 (E=6e-294) AFB3 | AFB3 (AUXIN SIGNALING F-BOX 3); auxin binding / ubiquitin-protein ligase (590 aa)
       
 
  0.532
Bra007720
AT3G62980 (E=0.0) TIR1 | TIR1 (TRANSPORT INHIBITOR RESPONSE 1); auxin binding / protein binding / ubiquitin-protein ligase (595 aa)
       
 
  0.532
Bra003518
AT3G62980 (E=0.0) TIR1 | TIR1 (TRANSPORT INHIBITOR RESPONSE 1); auxin binding / protein binding / ubiquitin-protein ligase (594 aa)
       
 
  0.532
Bra029067
AT5G53460 (E=0.0) GLT1 | GLT1; glutamate synthase (NADH) (2199 aa)
           
  0.485
Bra035648
AT5G57090 (E=2e-269) EIR1, WAV6, ATPIN2, PIN2, AGR, AGR1 | EIR1 (ETHYLENE INSENSITIVE ROOT 1); auxin efflux transmembrane transporter/ auxin-hydrogen symporter/ transporter ; May act as a component of the auxin efflux carrier (661 aa)
           
  0.475
Bra006834
AT5G57090 (E=2e-314) EIR1, WAV6, ATPIN2, PIN2, AGR, AGR1 | EIR1 (ETHYLENE INSENSITIVE ROOT 1); auxin efflux transmembrane transporter/ auxin-hydrogen symporter/ transporter ; May act as a component of the auxin efflux carrier (642 aa)
           
  0.475
Bra030560
AT1G04250 (E=4e-119) AXR3, IAA17 | AXR3 (AUXIN RESISTANT 3); transcription factor ; Aux/IAA proteins are short-lived transcriptional factors that function as repressors of early auxin response genes at low auxin concentrations (229 aa)
           
  0.470
Bra004693
AT2G42430 (E=4e-089) LBD16, ASL18 | LBD16 (LATERAL ORGAN BOUNDARIES-DOMAIN 16) (244 aa)
           
  0.461
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
Server load: low (8%) [HD]