STRINGSTRING
Bra000588 protein (Brassica rapa) - STRING interaction network
"Bra000588" - AT2G20920 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000588AT2G20920 (E=6e-102) | unknown protein (285 aa)    
Predicted Functional Partners:
Bra006522
AT5G19855 (E=1e-093) | unknown protein (204 aa)
   
        0.540
Bra029358
AT5G23040 (E=3e-018) CDF1 | CDF1 (CELL GROWTH DEFECT FACTOR 1) (115 aa)
           
  0.540
Bra020067
AT5G19855 (E=2e-090) | unknown protein (258 aa)
   
        0.539
Bra029139
AT5G52110 (E=6e-090) HCF208, CCB2 | HCF208 (HIGH CHLOROPHYLL FLUORESCENCE 208) (224 aa)
   
          0.523
Bra010636
AT4G38100 (E=3e-064) | unknown protein (191 aa)
   
          0.521
Bra008533
AT4G01150 (E=1e-063) | unknown protein (169 aa)
   
          0.521
Bra037380
AT4G01150 (E=7e-064) | unknown protein (162 aa)
   
          0.520
Bra035516
AT1G32060 (E=1e-099) PRK | PRK (PHOSPHORIBULOKINASE); ATP binding / phosphoribulokinase/ protein binding (191 aa)
   
          0.520
Bra000947
AT4G01150 (E=5e-068) | unknown protein (164 aa)
   
          0.520
Bra003900
AT1G72030 (E=6e-098) | GCN5-related N-acetyltransferase (GNAT) family protein (249 aa)
   
          0.519
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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