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Bra000594 protein (Brassica rapa) - STRING interaction network
"Bra000594" - AT5G49720 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
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Gene Fusion
Cooccurence
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Experiments
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Textmining
[Homology]
Score
Bra000594AT5G49720 (E=0.0) ATGH9A1, DEC, KOR, RSW2, IRX2, KOR1 | ATGH9A1 (ARABIDOPSIS THALIANA GLYCOSYL HYDROLASE 9A1); cellulase/ hydrolase, hydrolyzing O-glycosyl compounds (621 aa)    
Predicted Functional Partners:
Bra023952
AT4G32410 (E=0.0) CESA1, RSW1 | CESA1 (CELLULOSE SYNTHASE 1); cellulose synthase/ transferase, transferring glycosyl groups (1083 aa)
     
 
  0.898
Bra011345
AT4G32410 (E=0.0) CESA1, RSW1 | CESA1 (CELLULOSE SYNTHASE 1); cellulose synthase/ transferase, transferring glycosyl groups (1080 aa)
     
 
  0.898
Bra024324
AT5G64740 (E=0.0) CESA6, IXR2, E112, PRC1 | CESA6 (CELLULOSE SYNTHASE 6); cellulose synthase/ transferase, transferring glycosyl groups (1082 aa)
     
 
  0.760
Bra028768
AT5G05170 (E=0.0) CESA3, IXR1, ATCESA3, ATH-B, CEV1 | CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1); cellulose synthase/ transferase, transferring glycosyl groups (1066 aa)
     
 
  0.697
Bra005845
AT5G05170 (E=0.0) CESA3, IXR1, ATCESA3, ATH-B, CEV1 | CEV1 (CONSTITUTIVE EXPRESSION OF VSP 1); cellulose synthase/ transferase, transferring glycosyl groups (1055 aa)
     
 
  0.697
Bra012578
AT4G18780 (E=0.0) CESA8, IRX1, ATCESA8, LEW2 | IRX1 (IRREGULAR XYLEM 1); cellulose synthase/ transferase, transferring glycosyl groups (985 aa)
     
 
  0.695
Bra020139
AT5G20950 (E=7e-246) | glycosyl hydrolase family 3 protein (638 aa)
     
 
    0.683
Bra009417
AT5G04885 (E=0.0) | glycosyl hydrolase family 3 protein (794 aa)
     
 
    0.683
Bra005825
AT5G04885 (E=0.0) | glycosyl hydrolase family 3 protein (663 aa)
     
 
    0.683
Bra011865
AT4G39350 (E=0.0) CESA2, ATH-A, ATCESA2 | CESA2 (CELLULOSE SYNTHASE A2); cellulose synthase/ transferase, transferring glycosyl groups (1074 aa)
     
 
  0.670
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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