STRINGSTRING
Bra000595 protein (Brassica rapa) - STRING interaction network
"Bra000595" - AT2G23390 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000595AT2G23390 (E=2e-232) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- Protein of unknown function DUF482 (InterPro-IPR007434), Acyl-CoA N-acyltransferase (InterPro-IPR016181); Has 1806 Blast hits to 1806 proteins in 374 species- Archae - 0; Bacteria - 707; Metazoa - 0; Fungi - 0; Plants - 15; Viruses - 0; Other Eukaryotes - 1084 (source- NCBI BLink). (466 aa)    
Predicted Functional Partners:
Bra037978
AT1G55090 (E=0.0) | carbon-nitrogen hydrolase family protein (742 aa)
   
        0.554
Bra030888
AT1G55090 (E=0.0) | carbon-nitrogen hydrolase family protein (736 aa)
   
        0.554
Bra019074
AT1G67000 (E=1e-192) | ATP binding / kinase/ protein kinase/ protein serine/threonine kinase (825 aa)
              0.531
Bra029134
AT5G52190 (E=5e-080) | sugar isomerase (SIS) domain-containing protein (196 aa)
           
  0.505
Bra025187
AT3G26140 (E=8e-240) | glycosyl hydrolase family 5 protein / cellulase family protein (513 aa)
           
  0.505
Bra024150
AT4G29260 (E=8e-124) | acid phosphatase class B family protein (261 aa)
           
  0.505
Bra024112
AT4G30020 (E=0.0) | subtilase family protein (816 aa)
           
  0.505
Bra021004
AT4G18540 (E=7e-088) | unknown protein (571 aa)
           
  0.505
Bra013321
AT4G18540 (E=3e-080) | unknown protein (549 aa)
           
  0.505
Bra012588
AT4G18540 (E=4e-112) | unknown protein (547 aa)
           
  0.505
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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