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Bra000598 protein (Brassica rapa) - STRING interaction network
"Bra000598" - AT5G49900 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000598AT5G49900 (E=0.0) | catalytic/ glucosylceramidase ; Non-lysosomal glucosylceramidase that catalyzes the conversion of glucosylceramide to free glucose and ceramide (918 aa)    
Predicted Functional Partners:
Bra026898
AT1G13580 (E=1e-175) LAG13 | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) (308 aa)
         
  0.903
Bra026522
AT1G13580 (E=3e-143) LAG13 | LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) (304 aa)
         
  0.903
Bra029178
AT5G51290 (E=2e-309) | ceramide kinase-related (594 aa)
         
  0.900
Bra029531
AT4G04930 (E=9e-180) DES-1-LIKE | DES-1-LIKE; oxidoreductase/ sphingolipid delta-4 desaturase (334 aa)
         
  0.898
Bra022406
AT3G19260 (E=2e-119) LAG1 HOMOLOG 2, LOH2 | LOH2 (LAG ONE HOMOLOGUE 2) (332 aa)
         
  0.808
Bra001740
AT3G19260 (E=7e-138) LAG1 HOMOLOG 2, LOH2 | LOH2 (LAG ONE HOMOLOGUE 2) (352 aa)
         
  0.808
Bra014964
AT3G24180 (E=0.0) | catalytic/ glucosylceramidase ; Non-lysosomal glucosylceramidase that catalyzes the conversion of glucosylceramide to free glucose and ceramide (946 aa)
   
   
 
0.574
Bra037534
AT3G19260 (E=9e-127) LAG1 HOMOLOG 2, LOH2 | LOH2 (LAG ONE HOMOLOGUE 2) (352 aa)
         
  0.566
Bra011016
AT1G26200 (E=3e-148) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- integral to membrane; CONTAINS InterPro DOMAIN/s- Longevity assurance, LAG1/LAC1 (InterPro-IPR016439), TRAM, LAG1 and CLN8 homology (InterPro-IPR006634); BEST Arabidopsis thaliana protein match is- LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) (TAIR-AT1G13580.2). (299 aa)
         
  0.566
Bra011015
AT1G26200 (E=5e-142) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- integral to membrane; CONTAINS InterPro DOMAIN/s- Longevity assurance, LAG1/LAC1 (InterPro-IPR016439), TRAM, LAG1 and CLN8 homology (InterPro-IPR006634); BEST Arabidopsis thaliana protein match is- LAG13 (LAG1 LONGEVITY ASSURANCE HOMOLOG 3) (TAIR-AT1G13580.2). (314 aa)
         
  0.566
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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