STRINGSTRING
Bra000600 protein (Brassica rapa) - STRING interaction network
"Bra000600" - AT5G49930 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000600AT5G49930 (E=0.0) emb1441 | emb1441 (embryo defective 1441); nucleic acid binding / zinc ion binding (1092 aa)    
Predicted Functional Partners:
Bra016929
AT2G41500 (E=4e-240) LIS, EMB2776 | EMB2776; nucleotide binding (545 aa)
       
      0.881
Bra004625
AT2G41500 (E=1e-209) LIS, EMB2776 | EMB2776; nucleotide binding (489 aa)
       
      0.881
Bra006768
AT5G58410 (E=0.0) | binding / protein binding / zinc ion binding (2093 aa)
   
 
  0.779
Bra002652
AT5G58410 (E=0.0) | binding / protein binding / zinc ion binding (2113 aa)
   
 
  0.779
Bra008427
AT1G79620 (E=2e-194) | leucine-rich repeat transmembrane protein kinase, putative (1465 aa)
         
  0.672
Bra000209
AT2G40860 (E=0.0) | protein kinase family protein / protein phosphatase 2C ( PP2C) family protein (655 aa)
         
  0.672
Bra020136
AT5G20920 (E=1e-106) EIF2 BETA | EIF2 BETA; translation initiation factor (272 aa)
       
 
  0.654
Bra002341
AT5G20920 (E=1e-111) EIF2 BETA | EIF2 BETA; translation initiation factor (271 aa)
       
 
  0.654
Bra033149
AT3G57150 (E=6e-167) NAP57, AtNAP57, CBF5, AtCBF5 | NAP57 (Arabidopsis thaliana homologue of NAP57); pseudouridine synthase (547 aa)
     
      0.627
Bra008756
AT5G14460 (E=2e-220) | pseudouridine synthase/ transporter (522 aa)
     
      0.627
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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