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Bra000601 protein (Brassica rapa) - STRING interaction network
"Bra000601" - AT5G49940 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000601AT5G49940 (E=4e-083) NFU2, ATCNFU2 | NFU2 (NIFU-LIKE PROTEIN 2); structural molecule (226 aa)    
Predicted Functional Partners:
Bra037826
AT5G65720 (E=6e-222) ATNIFS1, NIFS1, NFS1, ATNFS1 | NFS1; ATP binding / cysteine desulfurase/ transaminase (457 aa)
   
  0.901
Bra024414
AT5G65720 (E=3e-018) ATNIFS1, NIFS1, NFS1, ATNFS1 | NFS1; ATP binding / cysteine desulfurase/ transaminase (155 aa)
   
  0.901
Bra026041
AT1G16540 (E=0.0) SIR3, LOS5, ABA3, ATABA3 | ABA3 (ABA DEFICIENT 3); Mo-molybdopterin cofactor sulfurase/ selenocysteine lyase ; Sulfurates the molybdenum cofactor. Sulfation of molybdenum is essential for xanthine dehydrogenase (XDH) and aldehyde oxidase (ADO) enzymes in which molybdenum cofactor is liganded by 1 oxygen and 1 sulfur atom in active form (820 aa)
       
  0.753
Bra029483
AT4G04080 (E=3e-050) ISU3, ATISU3 | ISU3 (ISCU-LIKE 3); structural molecule (115 aa)
   
 
  0.743
Bra020855
AT4G22220 (E=1e-084) ISU1, ATISU1 | ISU1; structural molecule ; Scaffold protein for the de novo synthesis of iron- sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins (164 aa)
   
 
  0.743
Bra013601
AT4G22220 (E=8e-084) ISU1, ATISU1 | ISU1; structural molecule ; Scaffold protein for the de novo synthesis of iron- sulfur (Fe-S) clusters within mitochondria, which is required for maturation of both mitochondrial and cytoplasmic [2Fe-2S] and [4Fe-4S] proteins (159 aa)
   
 
  0.743
Bra018621
AT1G08490 (E=1e-232) ATSUFS, SUFS, ATCPNIFS, ATNFS2, CPNIFS | CPNIFS (CHLOROPLASTIC NIFS-LIKE CYSTEINE DESULFURASE); cysteine desulfurase/ selenocysteine lyase/ transaminase (464 aa)
   
 
  0.736
Bra024181
AT3G24430 (E=1e-253) HCF101 | HCF101 (HIGH-CHLOROPHYLL-FLUORESCENCE 101); ATP binding (824 aa)
   
 
  0.692
Bra038236
AT5G50960 (E=2e-172) NBP35 | NBP35 (NUCLEOTIDE BINDING PROTEIN 35); iron-sulfur cluster binding / nucleotide binding / protein homodimerization (649 aa)
   
 
  0.663
Bra022463
AT5G50960 (E=1e-050) NBP35 | NBP35 (NUCLEOTIDE BINDING PROTEIN 35); iron-sulfur cluster binding / nucleotide binding / protein homodimerization (282 aa)
   
 
  0.663
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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