STRINGSTRING
Bra000602 protein (Brassica rapa) - STRING interaction network
"Bra000602" - AT5G49945 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000602AT5G49945 (E=1e-172) | unknown protein (469 aa)    
Predicted Functional Partners:
Bra039268
AT2G46650 (E=4e-063) B5 #1, ATCB5-C, CB5-C | CB5-C (CYTOCHROME B5 ISOFORM C); heme binding (134 aa)
       
      0.491
Bra037461
AT5G48810 (E=3e-054) ATB5-B, B5 #3, ATCB5-D, CB5-D | CB5-D (CYTOCHROME B5 ISOFORM D); heme binding (138 aa)
       
      0.491
Bra036160
AT5G48810 (E=4e-054) ATB5-B, B5 #3, ATCB5-D, CB5-D | CB5-D (CYTOCHROME B5 ISOFORM D); heme binding (140 aa)
       
      0.491
Bra031489
AT1G60660 (E=7e-040) B5 #5, ATCB5LP, CB5LP | CB5LP (CYTOCHROME B5-LIKE PROTEIN); heme binding (121 aa)
       
      0.491
Bra029062
AT5G53560 (E=2e-028) ATB5-A, B5 #2, ATCB5-E, CB5-E | CB5-E (CYTOCHROME B5 ISOFORM E); heme binding (118 aa)
       
      0.491
Bra027144
AT1G60660 (E=3e-029) B5 #5, ATCB5LP, CB5LP | CB5LP (CYTOCHROME B5-LIKE PROTEIN); heme binding (201 aa)
       
      0.491
Bra024721
AT1G26340 (E=2e-058) B5 #6, ATCB5-A, CB5-A | CB5-A (CYTOCHROME B5 ISOFORM A); heme binding (135 aa)
       
      0.491
Bra022898
AT2G32720 (E=5e-059) B5 #4, ATCB5-B, CB5-B | CB5-B (CYTOCHROME B5 ISOFORM B); heme binding (134 aa)
       
      0.491
Bra022660
AT5G53560 (E=2e-069) ATB5-A, B5 #2, ATCB5-E, CB5-E | CB5-E (CYTOCHROME B5 ISOFORM E); heme binding (134 aa)
       
      0.491
Bra021809
AT2G32720 (E=6e-062) B5 #4, ATCB5-B, CB5-B | CB5-B (CYTOCHROME B5 ISOFORM B); heme binding (134 aa)
       
      0.491
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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