STRINGSTRING
Bra000603 protein (Brassica rapa) - STRING interaction network
"Bra000603" - AT5G49970 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000603AT5G49970 (E=2e-246) ATPPOX, PDX3 | ATPPOX (A. THALIANA PYRIDOXIN (PYRODOXAMINE) 5’-PHOSPHATE OXIDASE); pyridoxamine-phosphate oxidase (455 aa)    
Predicted Functional Partners:
Bra025583
AT5G13570 (E=6e-113) DCP2, TDT, ATDCP2 | DCP2 (DECAPPING 2); hydrolase/ m7G(5’)pppN diphosphatase/ mRNA binding / protein homodimerization (291 aa)
     
  0.983
Bra025582
AT5G13570 (E=7e-085) DCP2, TDT, ATDCP2 | DCP2 (DECAPPING 2); hydrolase/ m7G(5’)pppN diphosphatase/ mRNA binding / protein homodimerization (289 aa)
     
  0.983
Bra023421
AT5G13570 (E=1e-142) DCP2, TDT, ATDCP2 | DCP2 (DECAPPING 2); hydrolase/ m7G(5’)pppN diphosphatase/ mRNA binding / protein homodimerization (325 aa)
     
  0.983
Bra008818
AT5G13570 (E=1e-147) DCP2, TDT, ATDCP2 | DCP2 (DECAPPING 2); hydrolase/ m7G(5’)pppN diphosphatase/ mRNA binding / protein homodimerization (316 aa)
     
  0.983
Bra031623
AT1G08340 (E=5e-106) | rac GTPase activating protein, putative (649 aa)
     
  0.981
Bra030721
AT1G08370 (E=5e-125) DCP1, ATDCP1 | DCP1 (decapping 1); m7G(5’)pppN diphosphatase/ protein homodimerization (367 aa)
     
  0.981
Bra018630
AT1G08370 (E=1e-143) DCP1, ATDCP1 | DCP1 (decapping 1); m7G(5’)pppN diphosphatase/ protein homodimerization (362 aa)
     
  0.981
Bra039312
AT2G45810 (E=1e-252) | DEAD/DEAH box helicase, putative (517 aa)
     
  0.979
Bra037351
AT4G00660 (E=5e-253) | DEAD/DEAH box helicase, putative (510 aa)
     
  0.979
Bra008527
AT4G00660 (E=2e-109) | DEAD/DEAH box helicase, putative (330 aa)
     
  0.979
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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