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Bra000607 protein (Brassica rapa) - STRING interaction network
"Bra000607" - AT3G18130 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000607AT3G18130 (E=7e-110) RACK1C_AT | RACK1C_AT (RECEPTOR FOR ACTIVATED C KINASE 1 C); nucleotide binding (396 aa)    
Predicted Functional Partners:
Bra013079
AT2G16370 (E=4e-268) THY-1 | THY-1 (THYMIDYLATE SYNTHASE 1); dihydrofolate reductase/ thymidylate synthase ; Bifunctional enzyme. Involved in de novo dTMP biosynthesis. Key enzyme in folate metabolism (618 aa)
     
 
  0.997
Bra006768
AT5G58410 (E=0.0) | binding / protein binding / zinc ion binding (2093 aa)
     
      0.997
Bra002652
AT5G58410 (E=0.0) | binding / protein binding / zinc ion binding (2113 aa)
     
      0.997
Bra002156
AT5G18400 (E=8e-082) | unknown protein (383 aa)
     
      0.997
Bra020098
AT5G20290 (E=4e-090) | 40S ribosomal protein S8 (RPS8A) (226 aa)
     
 
  0.996
Bra006553
AT5G20290 (E=5e-088) | 40S ribosomal protein S8 (RPS8A) (289 aa)
     
 
  0.996
Bra002290
AT5G20290 (E=4e-087) | 40S ribosomal protein S8 (RPS8A) (227 aa)
     
 
  0.996
Bra032101
AT1G72370 (E=4e-124) P40, AP40, RP40, RPSAA | P40; structural constituent of ribosome ; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits (292 aa)
     
 
  0.996
Bra016062
AT1G72370 (E=3e-055) P40, AP40, RP40, RPSAA | P40; structural constituent of ribosome (238 aa)
     
 
  0.996
Bra008030
AT1G72370 (E=1e-136) P40, AP40, RP40, RPSAA | P40; structural constituent of ribosome ; Required for the assembly and/or stability of the 40S ribosomal subunit. Required for the processing of the 20S rRNA- precursor to mature 18S rRNA in a late step of the maturation of 40S ribosomal subunits (296 aa)
     
 
  0.996
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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