STRINGSTRING
Bra000610 protein (Brassica rapa) - STRING interaction network
"Bra000610" - AT5G50110 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
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[Homology]
Score
Bra000610AT5G50110 (E=7e-108) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- cell cycle; LOCATED IN- cellular_component unknown; EXPRESSED IN- 24 plant structures; EXPRESSED DURING- 14 growth stages; CONTAINS InterPro DOMAIN/s- Glucose inhibited division protein (InterPro-IPR003682); Has 3963 Blast hits to 3963 proteins in 1297 species- Archae - 0; Bacteria - 2754; Metazoa - 2; Fungi - 0; Plants - 18; Viruses - 0; Other Eukaryotes - 1189 (source- NCBI BLink). (205 aa)    
Predicted Functional Partners:
Bra013146
AT2G13440 (E=3e-212) | glucose-inhibited division family A protein (692 aa)
   
   
  0.869
Bra029717
AT3G23890 (E=1e-178) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (718 aa)
   
 
  0.795
Bra011071
AT3G23890 (E=0.0) TOPII, ATTOPII | TOPII (TOPOISOMERASE II); ATP binding / DNA binding / DNA topoisomerase (ATP-hydrolyzing)/ DNA topoisomerase/ DNA-dependent ATPase ; Control of topological states of DNA by transient breakage and subsequent rejoining of DNA strands. Topoisomerase II makes double-strand breaks (1412 aa)
   
 
  0.795
Bra032720
AT1G78010 (E=3e-010) | tRNA modification GTPase, putative (175 aa)
   
   
  0.782
Bra015640
AT1G78010 (E=8e-194) | tRNA modification GTPase, putative (468 aa)
   
   
  0.782
Bra041099
Uncharacterized protein (698 aa)
   
   
  0.774
Bra028796
AT5G04130 (E=0.0) | DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putative ; A type II topoisomerase that negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner (997 aa)
   
   
  0.626
Bra011405
AT4G33010 (E=0.0) AtGLDP1 | AtGLDP1 (Arabidopsis thaliana glycine decarboxylase P-protein 1); catalytic/ glycine dehydrogenase (decarboxylating)/ pyridoxal phosphate binding (1045 aa)
              0.552
Bra029828
AT5G04130 (E=0.0) | DNA topoisomerase, ATP-hydrolyzing, putative / DNA topoisomerase II, putative / DNA gyrase, putative ; A type II topoisomerase that negatively supercoils closed circular double-stranded DNA in an ATP-dependent manner (998 aa)
   
   
  0.547
Bra009485
AT5G04110 (E=1e-091) | DNA topoisomerase II family protein (512 aa)
   
   
  0.547
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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