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Bra000611 protein (Brassica rapa) - STRING interaction network
"Bra000611" - AT5G50120 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000611AT5G50120 (E=3e-168) | transducin family protein / WD-40 repeat family protein (389 aa)    
Predicted Functional Partners:
Bra022557
AT5G51660 (E=0.0) CPSF160, ATCPSF160 | CPSF160; nucleic acid binding (1448 aa)
     
  0.931
Bra039916
AT2G18090 (E=6e-020) | PHD finger family protein / SWIB complex BAF60b domain-containing protein / GYF domain-containing protein (144 aa)
     
  0.929
Bra035062
AT1G78770 (E=2e-291) APC6 | cell division cycle family protein (544 aa)
       
  0.925
Bra023473
AT5G14530 (E=6e-182) | transducin family protein / WD-40 repeat family protein (332 aa)
   
 
  0.886
Bra031808
AT5G66240 (E=4e-169) | transducin family protein / WD-40 repeat family protein (335 aa)
   
 
  0.885
Bra004185
AT1G66730 (E=9e-181) | ATP dependent DNA ligase family protein (1082 aa)
     
  0.833
Bra012038
AT2G26990 (E=3e-221) FUS12, ATCSN2, COP12, CSN2 | FUS12 (FUSCA 12) (854 aa)
     
  0.772
Bra009187
AT5G27010 (E=0.0) | binding (878 aa)
     
  0.767
Bra038533
AT2G22310 (E=3e-185) ATUBP4, UBP4 | ATUBP4 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 4); ubiquitin-specific protease (355 aa)
     
  0.753
Bra011823
AT4G39910 (E=9e-207) ATUBP3, UBP3 | ATUBP3 (ARABIDOPSIS THALIANA UBIQUITIN-SPECIFIC PROTEASE 3); ubiquitin-specific protease (441 aa)
     
  0.753
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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