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Bra000613 protein (Brassica rapa) - STRING interaction network
"Bra000613" - AT5G50200 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000613AT5G50200 (E=2e-074) WR3 | WR3 (WOUND-RESPONSIVE 3); nitrate transmembrane transporter (206 aa)    
Predicted Functional Partners:
Bra031610
AT1G08090 (E=3e-291) ATNRT2-1, NRT2, NRT2;1AT, ACH1, LIN1, ATNRT2.1, NRT2.1 | ATNRT2-1 (NITRATE TRANSPORTER 2-1); nitrate transmembrane transporter (529 aa)
       
 
  0.760
Bra002453
AT5G60770 (E=3e-286) ATNRT2.4, NRT2.4 | ATNRT2.4; nitrate transmembrane transporter (527 aa)
       
 
  0.713
Bra002451
AT5G60780 (E=3e-270) ATNRT2.3, NRT2.3 | ATNRT2.3; nitrate transmembrane transporter (536 aa)
       
 
  0.662
Bra030713
AT1G08090 (E=1e-290) ATNRT2-1, NRT2, NRT2;1AT, ACH1, LIN1, ATNRT2.1, NRT2.1 | ATNRT2-1 (NITRATE TRANSPORTER 2-1); nitrate transmembrane transporter (530 aa)
       
 
  0.579
Bra008333
AT1G77760 (E=0.0) NIA1, GNR1, NR1 | NIA1 (NITRATE REDUCTASE 1); nitrate reductase ; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (906 aa)
           
  0.544
Bra026991
AT1G12110 (E=2e-287) NRT1.1, CHL1-1, NRT1, B-1, ATNRT1, CHL1 | NRT1.1; nitrate transmembrane transporter/ transporter (589 aa)
           
  0.541
Bra016789
AT1G12110 (E=8e-281) NRT1.1, CHL1-1, NRT1, B-1, ATNRT1, CHL1 | NRT1.1; nitrate transmembrane transporter/ transporter (590 aa)
           
  0.541
Bra015656
AT1G77760 (E=1e-253) NIA1, GNR1, NR1 | NIA1 (NITRATE REDUCTASE 1); nitrate reductase (890 aa)
           
  0.474
Bra003670
AT1G77760 (E=0.0) NIA1, GNR1, NR1 | NIA1 (NITRATE REDUCTASE 1); nitrate reductase ; Nitrate reductase is a key enzyme involved in the first step of nitrate assimilation in plants, fungi and bacteria (910 aa)
           
  0.474
Bra037625
AT3G45060 (E=2e-296) ATNRT2.6, NRT2.6 | ATNRT2.6; nitrate transmembrane transporter (541 aa)
       
 
  0.468
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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