STRINGSTRING
Bra000614 protein (Brassica rapa) - STRING interaction network
"Bra000614" - AT5G50240 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000614AT5G50240 (E=8e-117) PIMT2 | PIMT2 (PROTEIN-L-ISOASPARTATE METHYLTRANSFERASE 2); protein-L-isoaspartate (D-aspartate) O-methyltransferase (267 aa)    
Predicted Functional Partners:
Bra021104
AT3G15352 (E=5e-026) ATCOX17, COX17 | ATCOX17; copper chaperone (78 aa)
     
      0.612
Bra019008
AT1G53030 (E=2e-035) | cytochrome c oxidase copper chaperone family protein (72 aa)
     
      0.612
Bra010932
AT1G27530 (E=1e-100) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Ubiquitin-conjugating enzyme/RWD-like (InterPro-IPR016135), Ubiquitin-fold modifier-conjugating enzyme 1 (InterPro-IPR014806); Has 183 Blast hits to 183 proteins in 80 species- Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 36 (source- NCBI BLink). ; E2-like enzyme which forms an intermediate wit [...] (174 aa)
       
      0.612
Bra010932.1-P
AT1G27530 (E=1e-100) | FUNCTIONS IN- molecular_function unknown; INVOLVED IN- biological_process unknown; LOCATED IN- cellular_component unknown; EXPRESSED IN- 23 plant structures; EXPRESSED DURING- 15 growth stages; CONTAINS InterPro DOMAIN/s- Ubiquitin-conjugating enzyme/RWD-like (InterPro-IPR016135), Ubiquitin-fold modifier-conjugating enzyme 1 (InterPro-IPR014806); Has 183 Blast hits to 183 proteins in 80 species- Archae - 0; Bacteria - 0; Metazoa - 126; Fungi - 0; Plants - 21; Viruses - 0; Other Eukaryotes - 36 (source- NCBI BLink). (174 aa)
       
      0.612
Bra039707
AT4G14930 (E=8e-153) | acid phosphatase survival protein SurE, putative (307 aa)
   
   
  0.592
Bra036915
AT4G14930 (E=4e-142) | acid phosphatase survival protein SurE, putative (312 aa)
   
   
  0.592
Bra016030
AT1G72880 (E=2e-153) | acid phosphatase survival protein SurE, putative (376 aa)
   
   
  0.592
Bra008057
AT1G72880 (E=1e-161) | acid phosphatase survival protein SurE, putative (381 aa)
   
   
  0.592
Bra003865
AT1G72880 (E=1e-167) | acid phosphatase survival protein SurE, putative (380 aa)
   
   
  0.592
Bra024064
AT2G36530 (E=2e-029) LOS2 | LOS2; copper ion binding / phosphopyruvate hydratase (188 aa)
   
 
  0.542
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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