STRINGSTRING
Bra000617 protein (Brassica rapa) - STRING interaction network
"Bra000617" - AT5G50310 in Brassica rapa
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000617AT5G50310 (E=2e-279) | kelch repeat-containing protein (953 aa)    
Predicted Functional Partners:
Bra037103
AT3G13230 (E=3e-078) | RNA binding (233 aa)
     
      0.905
Bra034696
AT3G13230 (E=1e-109) | RNA binding (281 aa)
     
      0.905
Bra031535
AT1G06720 (E=0.0) | INVOLVED IN- ribosome biogenesis; LOCATED IN- nucleus; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- AARP2CN (InterPro-IPR012948), Protein of unknown function DUF663 (InterPro-IPR007034); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G42440.1); Has 7944 Blast hits to 5342 proteins in 373 species- Archae - 33; Bacteria - 667; Metazoa - 2609; Fungi - 1045; Plants - 414; Viruses - 80; Other Eukaryotes - 3096 (source- NCBI BLink). (1667 aa)
     
        0.721
Bra015522
AT1G06720 (E=0.0) | INVOLVED IN- ribosome biogenesis; LOCATED IN- nucleus; EXPRESSED IN- 21 plant structures; EXPRESSED DURING- 13 growth stages; CONTAINS InterPro DOMAIN/s- AARP2CN (InterPro-IPR012948), Protein of unknown function DUF663 (InterPro-IPR007034); BEST Arabidopsis thaliana protein match is- unknown protein (TAIR-AT1G42440.1); Has 7944 Blast hits to 5342 proteins in 373 species- Archae - 33; Bacteria - 667; Metazoa - 2609; Fungi - 1045; Plants - 414; Viruses - 80; Other Eukaryotes - 3096 (source- NCBI BLink). (1160 aa)
     
        0.721
Bra023878
AT1G23280 (E=4e-015) | MAK16 protein-related (96 aa)
     
        0.699
Bra023781
AT1G23280 (E=2e-063) | MAK16 protein-related (286 aa)
     
        0.699
Bra007931
AT1G23280 (E=5e-083) | MAK16 protein-related (302 aa)
     
        0.699
Bra003949
AT1G23280 (E=6e-097) | MAK16 protein-related (305 aa)
     
        0.699
Bra001895
AT1G23280 (E=2e-092) | MAK16 protein-related (297 aa)
     
        0.699
Bra028656
AT5G08420 (E=6e-116) | RNA binding ; Required for 40S ribosome biogenesis. Involved in nucleolar processing of pre-18S ribosomal RNA and ribosome assembly (386 aa)
     
      0.675
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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