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Bra000619 protein (Brassica rapa) - STRING interaction network
"Bra000619" - AT5G50320 in Brassica rapa
Nodes:
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splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000619AT5G50320 (E=1e-306) ELO3, HAG3, HAC8 | ELO3 (ELONGATA 3); histone acetyltransferase (565 aa)    
Predicted Functional Partners:
Bra008809
AT5G13680 (E=0.0) ELO2, ABO1 | ABO1 (ABA-OVERLY SENSITIVE 1); transcription elongation regulator ; Acts as subunit of the RNA polymerase II elongator complex, which is a histone acetyltransferase component of the RNA polymerase II (Pol II) holoenzyme and is involved in transcriptional elongation (1347 aa)
     
  0.995
Bra034858
AT3G11220 (E=3e-169) ELO1 | Paxneb protein-related (357 aa)
     
  0.989
Bra040945
AT1G49540 (E=6e-034) | nucleotide binding (265 aa)
     
  0.980
Bra018791
AT1G49540 (E=0.0) | nucleotide binding (821 aa)
     
  0.980
Bra014198
AT1G49540 (E=9e-052) | nucleotide binding (492 aa)
     
  0.980
Bra014803
AT3G54610 (E=8e-206) HAT1, GCN5, HAG1, HAC3, HAG01, BGT | GCN5; DNA binding / H3 histone acetyltransferase/ histone acetyltransferase (548 aa)
     
 
  0.940
Bra014800
AT3G54610 (E=6e-182) HAT1, GCN5, HAG1, HAC3, HAG01, BGT | GCN5; DNA binding / H3 histone acetyltransferase/ histone acetyltransferase (525 aa)
     
 
  0.940
Bra007082
AT3G54610 (E=3e-073) HAT1, GCN5, HAG1, HAC3, HAG01, BGT | GCN5; DNA binding / H3 histone acetyltransferase/ histone acetyltransferase (258 aa)
     
 
  0.940
Bra026877
AT1G13870 (E=5e-155) DRL1 | DRL1 (DEFORMED ROOTS AND LEAVES 1); calmodulin binding / purine nucleotide binding (302 aa)
     
 
  0.920
Bra016723
AT1G13870 (E=5e-139) DRL1 | DRL1 (DEFORMED ROOTS AND LEAVES 1); calmodulin binding / purine nucleotide binding (300 aa)
     
 
  0.920
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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