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Bra000620 protein (Brassica rapa) - STRING interaction network
"Bra000620" - AT5G50340 in Brassica rapa
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
some 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Bra000620AT5G50340 (E=5e-205) | ATP binding / damaged DNA binding / nucleoside-triphosphatase/ nucleotide binding (402 aa)    
Predicted Functional Partners:
Bra017844
AT4G37670 (E=4e-129) | GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein (569 aa)
         
  0.517
Bra011778
AT4G37670 (E=0.0) | GCN5-related N-acetyltransferase (GNAT) family protein / amino acid kinase family protein (614 aa)
         
  0.517
Bra006584
AT5G20890 (E=2e-288) | chaperonin, putative ; Molecular chaperone; assists the folding of proteins upon ATP hydrolysis (748 aa)
     
 
  0.494
Bra015924
AT1G74260 (E=0.0) PUR4 | PUR4 (purine biosynthesis 4); ATP binding / catalytic/ phosphoribosylformylglycinamidine synthase (1516 aa)
         
  0.488
Bra003809
AT1G74260 (E=0.0) PUR4 | PUR4 (purine biosynthesis 4); ATP binding / catalytic/ phosphoribosylformylglycinamidine synthase (1380 aa)
         
  0.488
Bra004639
AT2G41680 (E=7e-262) NTRC | NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C); thioredoxin-disulfide reductase (521 aa)
         
  0.483
Bra000234
AT2G41680 (E=3e-246) NTRC | NTRC (NADPH-DEPENDENT THIOREDOXIN REDUCTASE C); thioredoxin-disulfide reductase (511 aa)
         
  0.483
Bra033427
AT3G52490 (E=0.0) | heat shock protein-related (796 aa)
         
  0.466
Bra032044
AT2G25140 (E=1e-159) HSP98.7, CLPB-M, CLPB4 | CLPB4 (CASEIN LYTIC PROTEINASE B4); ATP binding / ATPase/ nucleoside-triphosphatase/ nucleotide binding / protein binding (794 aa)
         
  0.466
Bra031556
AT1G07200 (E=0.0) | ATP-dependent Clp protease ClpB protein-related (951 aa)
         
  0.466
Your Current Organism:
Brassica rapa
NCBI taxonomy Id: 3711
Other names: B. rapa, Brassica, Brassica L., Brassica rapa, Brassica rapa L., Brassiceae, field mustard
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